Baran Aydogan
Contingent Worker
Contingent Worker
T314 Dept. Neuroscience and Biomedical Engineering
Full researcher profile
https://research.aalto.fi/...
Email
[email protected]
Phone number
+358505722554
Honors and awards
MICCAI CDMRI'21 DiSCo Tractography Challenge
Invitation or ranking in competition
Department of Neuroscience and Biomedical Engineering
Jan 2021
Towards real-time tractography-based TMS neuronavigation
Best poster award
Award or honor granted for a specific work
Department of Neuroscience and Biomedical Engineering
Jan 2021
MICCAI IronTract Tractography Challenge 2020 (Round 2)
Invitation or ranking in competition
Department of Neuroscience and Biomedical Engineering
Jan 2020
MICCAI IronTract Tractography Challenge 2019 (Round 1)
Invitation or ranking in competition
Department of Neuroscience and Biomedical Engineering
Jan 2019
Diffusion MRI processing pipeline for real-time tractography-based nTMS
Best abstract selected by the audience
Award or honor granted for a specific work
Department of Neuroscience and Biomedical Engineering
Nov 2019
ISBI 3-D Validation of Tractography with Experimental MRI (3D VoTEM)
Winner of phantom challenge
Invitation or ranking in competition
Department of Neuroscience and Biomedical Engineering
Jan 2018
ISMRM Tractography-reproducibility Challenge with Empirical Data (TraCED)
Rank 2
Invitation or ranking in competition
Department of Neuroscience and Biomedical Engineering
Jan 2017
MICCAI Young Scientist Award
Award or honor granted for a specific work
Department of Neuroscience and Biomedical Engineering
Jan 2016
Publications
brainlife.io : a decentralized and open-source cloud platform to support neuroscience research
Soichi Hayashi, Bradley A. Caron, Anibal Sólon Heinsfeld, Sophia Vinci-Booher, Brent McPherson, Daniel N. Bullock, Giulia Bertò, Guiomar Niso, Sandra Hanekamp, Daniel Levitas, Kimberly Ray, Anne MacKenzie, Paolo Avesani, Lindsey Kitchell, Josiah K. Leong, Filipi Nascimento-Silva, Serge Koudoro, Hanna Willis, Jasleen K. Jolly, Derek Pisner, Taylor R. Zuidema, Jan W. Kurzawski, Kyriaki Mikellidou, Aurore Bussalb, Maximilien Chaumon, Nathalie George, Christopher Rorden, Conner Victory, Dheeraj Bhatia, Dogu Baran Aydogan, Fang Cheng F. Yeh, Franco Delogu, Javier Guaje, Jelle Veraart, Jeremy Fischer, Joshua Faskowitz, Ricardo Fabrega, David Hunt, Shawn McKee, Shawn T. Brown, Stephanie Heyman, Vittorio Iacovella, Amanda F. Mejia, Daniele Marinazzo, R. Cameron Craddock, Emanuale Olivetti, Jamie L. Hanson, Eleftherios Garyfallidis, Dan Stanzione, James Carson, Robert Henschel, David Y. Hancock, Craig A. Stewart, David Schnyer, Damian O. Eke, Russell A. Poldrack, Steffen Bollman, Ashley Stewart, Holly Bridge, Ilaria Sani, Winrich A. Freiwald, Aina Puce, Nicholas L. Port, Franco Pestilli
2024
Nature Methods
Why is the Winner the Best?
M. Eisenmann, A. Reinke, V. Weru, M. D. Tizabi, F. Isensee, T. J. Adler, S. Ali, V. Andrearczyk, M. Aubreville, U. Baid, S. Bakas, N. Balu, S. Bano, J. Bernal, S. Bodenstedt, A. Casella, V. Cheplygina, M. Daum, M. De Bruijne, A. Depeursinge, R. Dorent, J. Egger, D. G. Ellis, S. Engelhardt, M. Ganz, N. Ghatwary, G. Girard, P. Godau, A. Gupta, L. Hansen, K. Harada, M. Heinrich, N. Heller, A. Hering, J. Li, H. Li, J. Ma, D. Aydogan, M. Li, M. Luu, D. Owen, S. Park, H. Wang, J. Wang, L. Wang, X. Wang, J. Xie, S. Yang, Y. Yang, Z. Zhao
2023
Proceedings - 2023 IEEE/CVF Conference on Computer Vision and Pattern Recognition, CVPR 2023
Tractography passes the test : Results from the diffusion-simulated connectivity (disco) challenge
Gabriel Girard, Jonathan Rafael-Patiño, Raphaël Truffet, Dogu Baran Aydogan, Nagesh Adluru, Veena A. Nair, Vivek Prabhakaran, Barbara B. Bendlin, Andrew L. Alexander, Sara Bosticardo, Ilaria Gabusi, Mario Ocampo-Pineda, Matteo Battocchio, Zuzana Piskorova, Pietro Bontempi, Simona Schiavi, Alessandro Daducci, Aleksandra Stafiej, Dominika Ciupek, Fabian Bogusz, Tomasz Pieciak, Matteo Frigo, Sara Sedlar, Samuel Deslauriers-Gauthier, Ivana Kojčić, Mauro Zucchelli, Hiba Laghrissi, Yang Ji, Rachid Deriche, Kurt G. Schilling, Bennett A. Landman, Alberto Cacciola, Gianpaolo Antonio Basile, Salvatore Bertino, Nancy Newlin, Praitayini Kanakaraj, Francois Rheault, Patryk Filipiak, Timothy M. Shepherd, Ying Chia Lin, Dimitris G. Placantonakis, Fernando E. Boada, Steven H. Baete, Erick Hernández-Gutiérrez, Alonso Ramírez-Manzanares, Ricardo Coronado-Leija, Pablo Stack-Sánchez, Luis Concha, Maxime Descoteaux, Sina Mansour L．, Caio Seguin, Andrew Zalesky, Kenji Marshall, Erick J. Canales-Rodríguez, Ye Wu, Sahar Ahmad, Pew Thian Yap, Antoine Théberge, Florence Gagnon, Frédéric Massi, Elda Fischi-Gomez, Rémy Gardier, Juan Luis Villarreal Haro, Marco Pizzolato, Emmanuel Caruyer, Jean Philippe Thiran
2023
NeuroImage
Limb-specific thalamocortical tracts are impaired differently in hemiplegic and diplegic subtypes of cerebral palsy
J Jaatela, DB Aydogan, T Nurmi, J Vallinoja, H Maenpaa, H Piitulainen
2023
Cerebral Cortex
DELMEP : a deep learning algorithm for automated annotation of motor evoked potential latencies
Diego Milardovich, Victor H. Souza, Ivan Zubarev, Sergei Tugin, Jaakko O. Nieminen, Claudia Bigoni, Friedhelm C. Hummel, Juuso T. Korhonen, Dogu B. Aydogan, Pantelis Lioumis, Nima Taherinejad, Tibor Grasser, Risto J. Ilmoniemi
2023
Scientific Reports
Depression core network-based individualized targeting for transcranial magnetic stimulation
Tuukka T. Raij, Emma Komulainen, Dogu Baran Aydogan, Siina Pamilo, Erkki Isometsä, Tommi Raij
2023
Brain Stimulation
FreeSurfer 7 quality control : Key problem areas and importance of manual corrections
Vesa Vahermaa, Dogu Baran Aydogan, Tuukka Raij, Reetta-Liina Armio, Heikki Laurikainen, Jari Saramäki, Jaana Suvisaari
2023
NeuroImage
Network analysis shows decreased ipsilesional structural connectivity in glioma patients
Lucius S. Fekonja, Ziqian Wang, Alberto Cacciola, Timo Roine, D. Baran Aydogan, Darius Mewes, Sebastian Vellmer, Peter Vajkoczy, Thomas Picht
2022
Communications Biology
Identification of proprioceptive thalamocortical tracts in children: comparison of fMRI, MEG, and manual seeding of probabilistic tractography
Julia Jaatela, Dogu Baran Aydogan, Timo Nurmi, Jaakko Vallinoja, Harri Piitulainen
2022
Cerebral Cortex
Insights from the IronTract challenge: Optimal methods for mapping brain pathways from multi-shell diffusion MRI
Chiara Maffei, Gabriel Girard, Kurt G. Schilling, Dogu Baran Aydogan, Nagesh Adluru, Andrey Zhylka, Ye Wu, Matteo Mancini, Andac Hamamci, Alessia Sarica, Achille Teillac, Steven H. Baete, Davood Karimi, Fang Cheng Yeh, Mert E. Yildiz, Ali Gholipour, Yann Bihan-Poudec, Bassem Hiba, Andrea Quattrone, Aldo Quattrone, Tommy Boshkovski, Nikola Stikov, Pew Thian Yap, Alberto de Luca, Josien Pluim, Alexander Leemans, Vivek Prabhakaran, Barbara B. Bendlin, Andrew L. Alexander, Bennett A. Landman, Erick J. Canales-Rodríguez, Muhamed Barakovic, Jonathan Rafael-Patino, Thomas Yu, Gaëtan Rensonnet, Simona Schiavi, Alessandro Daducci, Marco Pizzolato, Elda Fischi-Gomez, Jean Philippe Thiran, George Dai, Giorgia Grisot, Nikola Lazovski, Santi Puch, Marc Ramos, Paulo Rodrigues, Vesna Prčkovska, Robert Jones, Julia Lehman, Suzanne N. Haber
2022
NeuroImage